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fn_hsd {Repbio}

20 May 2024

fn_hsd.Rmd

fn_hsd

Description

The row name is used to sort the factor column result from the TukeyHSD test. These are renamed with the name of the phases and finally, they are sorted, in decreasing mode, by the average response values (column 1).

It returns a vector with the names of the phases arranged in descending order of the average response.

The function requires defining:

  • hsd_out: A TukeyHSD test table, comes from the result of the Tukey_HSD function.
  • Phases_legend: A character vector that has the name or number of maturity stages defined by the user.

fn_hsd

The function is included in the Repbio package Reproductive biology analysis.

#library(Repbio)

The function is detailed below.

fn_hsd <- function(hsd_out,Phases_legend){
  hsd_tmp <- hsd_out$groups[order(rownames(hsd_out$groups)), ]
  rownames(hsd_tmp) <- Phases_legend
  hsd_tmp <- hsd_tmp[order(hsd_tmp[,1], decreasing = TRUE),]
  r_names <- rownames(hsd_tmp)
  return <- r_names
} # End fn_hsd

Examples

Falta detallar el ejemplo.

    # hsd_out <- tmp
    # Phases_legend <- c("I", "II", "III", "IV", "V", "VI")
    # 
    # ejemplo <- fn_hsd(hsd_out,Phases_legend)

References

Salas‐Singh, C., Morales‐Bojórquez, E., & Aguirre‐Villaseñor, H. (2022). Reproductive biology of the bullseye puffer Sphoeroides annulatus: Gonadosomatic index and its suitability for estimating length at maturity. Journal of Fish Biology, 101(5), 1119-1133.https://doi.org/10.1111/jfb.15174